F.A.I.R. data management for omics (genomics, metabolomics, proteomics) studies. Web interface for biomedical scientist and command line interface and API for bioinformaticians.
SODAR Study Management
Features
- Scalable data storage for
- NGS raw data & Metadata
- Processing Results
- Extendable Metadata Model, based on ISA Tools Standard
- IGV and UCSC Integration
- Data Privacy
- Charité & MDC User Authentification
- Project based Authorization with different Roles and Rights
- Full Audit Trail and Access Logs
- Web interface for biomedical scientist
- Command line interface for bioinformaticians
- API for data/systems integration
- iRODS Technology
- Metadata Editor
- In use for 100+ projects
Related CUBI Resources
- SODAR instance reachable from internal networks
Technology
Talk on the technolgy and use cases at the iRODS User Meeting in Holland 2019, https://irods.org/ugm2019/, 30 minutes on youtube
SODAR Overview
Licence and Availabilty
- Availabilty
- currently inhouse use only
- public open source release planed
- Contact: Mikko Nieminen
Related Publications
M. Nieminen, O. Stolpe, F. Schumann, M. Holtgrewe, D. Beule
*SODAR Core: a Django-based framework for scientific data management
and analysis web apps, DOI
Last modified: Jan 1, 0001