SODAR

F.A.I.R. data management for omics (genomics, metabolomics, proteomics) studies. Web interface for biomedical scientist and command line interface and API for bioinformaticians.

SODAR Webapp

SODAR Study Management

Features
  • Scalable data storage for
    • NGS raw data & Metadata
    • Processing Results
    • Extendable Metadata Model, based on ISA Tools Standard
  • IGV and UCSC Integration
  • Data Privacy
    • Charit√© & MDC User Authentification
    • Project based Authorization with different Roles and Rights
    • Full Audit Trail and Access Logs
  • Web interface for biomedical scientist
  • Command line interface for bioinformaticians
  • API for data/systems integration
  • iRODS Technology
  • Metadata Editor
  • In use for 100+ projects

SODAR

  • SODAR instance reachable from internal networks
Technology

Talk on the technolgy and use cases at the iRODS User Meeting in Holland 2019, https://irods.org/ugm2019/, 30 minutes on youtube

SODAR Overview

SODAR Overview

Licence and Availabilty
  • Availabilty
    • currently inhouse use only
    • public open source release planed
  • Contact: Mikko Nieminen

M. Nieminen, O. Stolpe, F. Schumann, M. Holtgrewe, D. Beule
*SODAR Core: a Django-based framework for scientific data management and analysis web apps, DOI

Last modified: Jan 1, 0001